|
Identifies nodes membership in a tree with the edge: "source relationship target" between two objects. The target objects serial no is a presentation sibling listing order.Assign source to 0 to indicate target is root. Obj name/descr unused. |
413 |
x |
|
SenseLab blog |
1 |
x |
|
This object provides the opportunity to store and present alternative versions of a model. For example these may be the authors original code or a version of the model that runs on a different simulator than the current version. |
192 |
x |
|
About model entries, such as whether or not the model code was solicited, or found on the web. |
6 |
x |
|
These are the names of neurons and other electrically excitable cells that are represented in models in ModelDB but are not (yet) in NeuronDB |
202 |
x |
|
Name provides one or more adjacent international characters via comma seperated decimal values, while description supplies their ascii replacement if any also as comma seperated decimal values. |
75 |
x |
|
Current or potential collaborations between local and remote researchers for the purpose of entering models into ModelDB |
1550 |
x |
|
The objects in this class describe a model component such as an ion channel by connecting a modeldb attribute to a file or part of a file in the model archive (zip file). |
5 |
x |
|
Gap Junctions |
1 |
x |
|
These (ModelDB applicable) gene's are involved in neuronal function or make up the sub-units which, when assembled, form membrane channels and receptors. |
62 |
x |
|
Gene information related to particular specie |
|
x |
|
This class is used to associate a mechanism (such as NEURON mod) file with a current or receptor type keyword in ModelDB and possibly many other details |
75 |
x |
|
An implementers is someone who wrote model code. The email address for the individual or group should be provided at the end of the object name in angle brackets. |
1072 |
x |
|
This class is used to store journal names and abbreviations. The names are linked together by the Journals tree whose children are the main names and whose grandchildren are the synonyms. Scripts assign the doi's with methods of querying the journal. |
7 |
x |
|
A Senselab ModelDB group member that is participating in collaborations to enter models in ModelDB. |
5 |
x |
|
Big-picture realm, or subject that the model addresses. |
214 |
x |
|
Physical extent of the model |
21 |
x |
|
Modeling software in which the model was made |
173 |
x |
|
The object_name is a word or phrase being defined by the definition attribute (and likely categorized by relationship class) |
64 |
x |
|
Stores paper and book citations. |
75281 |
x |
|
Model Paper Author |
100404 |
x |
|
This class holds objects that can be attached to papers that describes how the paper referenced ModelDB in its text or citations. |
4 |
x |
|
The name is the object id (accession number) of the model and the description is the yyyymmdd format of the date the model was first made public. Additional notes. |
1621 |
x |
|
Relationships are also known as relations. The most frequent examples are "is a" (equivalence), "has more elements but includes", "is a part of". The relationship is given verbatim in the object_name. |
8 |
x |
|
Keeps track of the different platforms (OSs and application versions) on which simulation software was tested. |
3 |
x |
|
|
774 |
x |
|
Species used for annotating Cells, Papers, Genes, etc. |
24 |
x |
|
These SQL programs are intended to display tables that are useful for administration and development of scripts. |
116 |
x |
|
Status of a collaboration of a ModelDB administrator-modeler. |
8 |
x |
|
Defines cross class hierarchies. A particular tree is indicated by a collection of object_relationship objects with the particular tree selected as their tree attribute. The object_relationship objects assigns the relationships between them. |
11 |
x |